PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018860-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 215aa    MW: 24376.8 Da    PI: 7.8395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018860-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-1065111554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +  rE+ RRdr+N++f  L ++l +    +  K +K++i+  A++ +++L
  NNU_018860-RA  65 KACREKMRRDRMNDRFLDLSSVLEPG---RPAKTDKSAIVSDAIRVLNQL 111
                    678**********************8...89****************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.11960111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.61E-864116No hitNo description
SuperFamilySSF474597.33E-1265129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-865111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-866117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1067133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd008900.00284105180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDSLKDSSWN LLDYDMIEDG TSSDFYWNNQ ICCLDFQSPT GSVPQEKACA RKRGRNQSCS  60
DPGSKACREK MRRDRMNDRF LDLSSVLEPG RPAKTDKSAI VSDAIRVLNQ LRTEAQELKD  120
ASEKLREVIK NLKAEKNELR EEKLQLKADK EKMEQQVKAM SLLPAGFVPP LPATYHTGAN  180
KLMAYPSYGG FPMWQWIPPV VLDTSQDHVL RPPVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274798.11e-160PREDICTED: transcription factor bHLH104-like
SwissprotQ8L4674e-68BH104_ARATH; Transcription factor bHLH104
TrEMBLE3WDH31e-107E3WDH3_COPJA; BHLH transcriptional factor
STRINGVIT_14s0081g00720.t013e-98(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.22e-69bHLH family protein